PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_006910_spyx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family TALE
Protein Properties Length: 544aa    MW: 60485.3 Da    PI: 6.3601
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_006910_spyx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox253.2e-084594961954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        F +  ++yp+ +e+  LA k gLt +qV++WF N R +
  Bv_006910_spyx.t1 459 FDNflHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVR 496
                        555558******************************88 PP
2BELL74.91.2e-24337402672
               BELL   6 qkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +kk+++l ll++Vd+rY+++ +++++vis+F+a+++l++ +++  +Al++iS+ +++L+++i++qi
  Bv_006910_spyx.t1 337 SSKKSQMLALLQMVDDRYNRCLDEIHMVISAFHAATELDP-QLHSCFALQTISFFYKNLRERISNQI 402
                        68**************************************.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.6E-30258400IPR006563POX domain
PfamPF075265.7E-25264399IPR006563POX domain
PROSITE profilePS5007110.884437500IPR001356Homeobox domain
SMARTSM003897.2E-5440504IPR001356Homeobox domain
CDDcd000861.01E-10440500No hitNo description
SuperFamilySSF466899.41E-15442508IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-24443505IPR009057Homeodomain-like
PfamPF059201.5E-14457496IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MESEPHMQLD HPSCIPTVID GFPSQTLSES HLRTTFFQLN TQNDDNSSMH GFPLLPSFQG  60
QSFRDIHADK TVSYDGSINR GNSNLQDLCL GGASFASGSL PTILNSRNGL NNDANNSVIS  120
LQQEVVPSES LRAMFSGGCS YASSSSIPIT LNCGYDGSFG YDRFLMQQEM NWRASASGLE  180
PIRFNESQDA HNGWVLPSSE NVCTSHPYGT STSHNELSLS LATCRPSLPS DLTKLGSDHS  240
SHCSKELSLG CTSNSRSGQF SPIVSGSRYL SVLQQILSEV ASYSLDSLDK TSNCSGNLGN  300
SSLNLPFTSD HICDPGSSSK DANELHDDGS FEVLAGSSKK SQMLALLQMV DDRYNRCLDE  360
IHMVISAFHA ATELDPQLHS CFALQTISFF YKNLRERISN QILAMGMDNT SVRDSVVSVD  420
KSFMSKQWTL QQLKRKDQLW RPQRGLPERS VSVLRAWMFD NFLHPYPKDA EKHLLAIKSG  480
LTRSQVSNWF INARVRLWKP LVEEMCSEIN RKKGIVRQND EGTNNTSNSR SQLRIYDFDQ  540
RFSN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667131.10.0PREDICTED: homeobox protein ATH1
SwissprotP487312e-93ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A0J8B6N50.0A0A0J8B6N5_BETVU; Uncharacterized protein
STRINGXP_010667130.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.16e-94homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]