PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_007850_gdtm.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 371aa    MW: 41815.9 Da    PI: 6.5615
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_007850_gdtm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.3e-06219241123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C+ C++ F+r  nL+ H+r H
  Bv_007850_gdtm.t1 219 HYCQVCSRGFKRETNLRMHMRAH 241
                        68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.88E-5218244No hitNo description
SMARTSM003550.0075219241IPR015880Zinc finger, C2H2-like
PfamPF139129.9E-6219241IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.427219246IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-5220244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280221241IPR007087Zinc finger, C2H2
SMARTSM0035572269302IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MVLQEEIYCF SNTIDTAEGG GQPSYLYHGV FGTSVDGGAG SSETPLSSVR FNLSMLREKV  60
NEVESFVNIF KENNPNSAHQ PVDQLTSSMA YTSIAFLMQE IIETASSMML KCQEMALGST  120
QMGSNNEVPQ SMQIPDIGVE EFSTMGVDES NTNSNQEFWG GDSYYNMYIH STSYNNNHQR  180
SNDGTNASDT AVQEEEENGN QEWDVVEIDA ADLLARLIHY CQVCSRGFKR ETNLRMHMRA  240
HGDKYKASLN INTGGNNERN KAMKPPRKYS CPQNGCRWNK NHVKFQPLKS IVCVKNHYKR  300
SHCPKMFMCK RCNQKQFAVL SDLKTHENNC GDIKWYCSCG TTFSKKDKLM DHVALFVGHT  360
PLINPSTLQF A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667295.10.0PREDICTED: zinc finger protein STAR3
TrEMBLA0A0J8DX870.0A0A0J8DX87_BETVU; Uncharacterized protein
STRINGXP_010667295.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.14e-92C2H2 family protein