PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_007870_nesr.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 370aa    MW: 41964.7 Da    PI: 7.9539
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_007870_nesr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.7e-07209231123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C++Cgk F+r  nL+ H+r H
  Bv_007870_nesr.t1 209 HYCQICGKGFKRDANLRMHMRAH 231
                        68*******************99 PP
2zf-C2H2120.00063293316123
                        EEETTTT.EEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                        + C++C+ k Fs  s+Lk+H + +
  Bv_007870_nesr.t1 293 FICKKCNlKQFSVLSDLKTHEKHC 316
                        89******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.89E-6207232No hitNo description
Gene3DG3DSA:3.30.160.603.5E-6209258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.196209236IPR007087Zinc finger, C2H2
SMARTSM003550.0028209231IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280211231IPR007087Zinc finger, C2H2
SMARTSM00355150255288IPR015880Zinc finger, C2H2-like
SMARTSM0035521293315IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MIQETFVPCF TNSTDGDEGI HLAQQQRDAL QPSFNNGGAP VFETQSMRSL FSGLSILKQK  60
TDEVESFMSM ILNQQVNHYI GQPVDELTSS MAFSSMANLM PDIVQTAISM MRGCEQLAFD  120
SAQAGNTSST STMHSDHQEM HTIQKPDDGL FQQLIVEGVD ESNNHTRDSF NNLYTHTSKS  180
TVNQECEVSP YAFDVVELDA ADLLARYTHY CQICGKGFKR DANLRMHMRA HGDQYKSSLV  240
SNNPVKKTMT STRKYSCPQE GCRWNKNHVK FQPLKSIVCA KNHYKRSHCP KMFICKKCNL  300
KQFSVLSDLK THEKHCGNIK WQCSCGTTFS KKDKLMDHVA LFIGHTPSIN RPIIIMDNQH  360
EVGKYKLCYR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667301.11e-133PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ0WT242e-90STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A0J8B6S70.0A0A0J8B6S7_BETVU; Uncharacterized protein
STRINGXP_010667299.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-92C2H2 family protein