PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_008480_ntna.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 426aa    MW: 47650.9 Da    PI: 6.3723
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_008480_ntna.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-10105128427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        e C+ff r+GtCk+G +CkF+H+p
  Bv_008480_ntna.t1 105 EDCSFFIRNGTCKFGMNCKFNHPP 128
                        89********************97 PP
2zf-CCCH27.74.7e-09165187527
                        --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                        +C++f r G Ck+G  CkF+H++
  Bv_008480_ntna.t1 165 NCKYFDRPGGCKFGKACKFNHSR 187
                        7********************95 PP
3zf-CCCH39.31e-12205229226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        ++++C+f++r+G Ck+G++C+F+H+
  Bv_008480_ntna.t1 205 GERECPFYMRNGSCKFGASCRFNHP 229
                        5799********************9 PP
4zf-CCCH30.85.1e-10332358127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +++++C+ff++tG Cky + CkF+H++
  Bv_008480_ntna.t1 332 PGQPECSFFLKTGDCKYKSACKFNHPK 358
                        5789*********************96 PP
5zf-CCCH34.24.4e-11379403226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        ++  C+++ r+G+CkyG+ Ck+ H+
  Bv_008480_ntna.t1 379 GENVCSYYNRYGICKYGPACKYDHP 403
                        6778********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.784101129IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-4101128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-5103130IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-7105128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.001107127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-5159187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.859160188IPR000571Zinc finger, CCCH-type
SMARTSM003560.062161187IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-7165187IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6203230IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-6203230IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.525203231IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-10205229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4209228IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4331358IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.033331359IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-7333358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-5335359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6375403IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286377405IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6377404IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-9379403IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4382402IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MESELESSPI VSPAKQESSS ITSPEPSSPP SDHHKSSDSI NDQLNSLSFE DTKLDNGGED  60
RDHTEERENN EENEESENVS KIEERENEFS RRRSISGFPV RPDAEDCSFF IRNGTCKFGM  120
NCKFNHPPNH RKFQGVKVKA KEECVDSATQ NATENDESLY KEQINCKYFD RPGGCKFGKA  180
CKFNHSRKFN PTLKLNFMGL PIRLGERECP FYMRNGSCKF GASCRFNHPD PTSSGRPDAL  240
SRYGNGGPIF SPDASQSTPA PWSPTALNEN PPYVPLMFSP AQGVPTQPEW NAYQAPVYAP  300
ERSMHMSPIY AMNTRLLERP EHTLGDEFPE RPGQPECSFF LKTGDCKYKS ACKFNHPKSA  360
RSQSSACLLS DLGLPLRPGE NVCSYYNRYG ICKYGPACKY DHPINHAYSP VLGDSMVNNQ  420
AMAAGI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667394.10.0PREDICTED: zinc finger CCCH domain-containing protein 67
SwissprotQ9STM41e-101C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0J8B6J50.0A0A0J8B6J5_BETVU; Uncharacterized protein
STRINGXP_010667394.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-102C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]