PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_008490_cjwm.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 1408aa    MW: 157640 Da    PI: 7.9913
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_008490_cjwm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003113171339323
                         ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                         Cp   Cgk F ++ +L++H r+H
  Bv_008490_cjwm.t1 1317 CPvkGCGKKFFSHKYLVQHRRVH 1339
                         9999*****************99 PP
2zf-C2H212.80.0003613751401123
                         EEET..TTTEEESSHHHHHHHHHH..T CS
            zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                         y+C+   Cg++F+  s++ rH r+  H
  Bv_008490_cjwm.t1 1375 YVCNepGCGQTFRFVSDFSRHKRKtgH 1401
                         99********************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.1E-162566IPR003349JmjN domain
PROSITE profilePS5118313.912667IPR003349JmjN domain
PfamPF023757.2E-142760IPR003349JmjN domain
SuperFamilySSF511973.57E-25162375No hitNo description
SMARTSM005586.4E-49192361IPR003347JmjC domain
PROSITE profilePS5118432.776192361IPR003347JmjC domain
PfamPF023733.8E-37225344IPR003347JmjC domain
Gene3DG3DSA:3.30.160.606.0E-412851314IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552512921314IPR015880Zinc finger, C2H2-like
SMARTSM003550.004513151339IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.17E-613151352No hitNo description
PROSITE profilePS5015712.44513151344IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-513161343IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028013171339IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.3E-813441369IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002313451369IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7213451374IPR007087Zinc finger, C2H2
PROSITE patternPS00028013471369IPR007087Zinc finger, C2H2
SuperFamilySSF576671.63E-913551399No hitNo description
Gene3DG3DSA:3.30.160.601.4E-913701398IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.1413751401IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.65513751406IPR007087Zinc finger, C2H2
PROSITE patternPS00028013771401IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1408 aa     Download sequence    Send to blast
MGSSSFVTAE HSTPEVFPWL KTLPVAPEYH PTIQEFQDPI AYIFKIEKEA SKFGICKIVP  60
PVPPQSKKSV IANFNRSLES LSDTQKNPKS QPTFTTRQQQ VGFCPRKQRP IHKAVWQSGE  120
YYTLQQFEAK AKNFEKIYLK NRVKKTVSPL EVETLYWKAN GDRPFSVEYA NDMPGSGFVP  180
MKEKKTGEVV ANVGESAWNM RGVARANGSL LRFMKEEIPG VTSPMVYVAM MFSWFAWHVE  240
DHDLHSLNYL HLGASKTWYG CPKDAASAFE EVIRVHGFGE EINPLVTFAT LGEKTTVMSP  300
EVLVNAGVPC CRLVQNAGEF VVTFPRAYHS GFSHGFNCGE ASNIATPEWL RFAKDAAIRR  360
ASINYPPMVS HFQLLYDLAL AICSRVPTGS NAEPRSSRLK DKKKGEGEML VKQMFVHDVI  420
QNNDLLNTLG QGSEVVLLPH NSSEIFVWSN LRVGSKYKVK PGLPFSLYSS EEAIKASDDI  480
MLARDVKQQK GFHSVKTKFG GCTTPHEIQH SETFKGGSSA GDGSDRGLFS CVKCGIWTFA  540
CVAIVQPTES AARYLMSADF SFFNDWIAGS AVSSHGIDAT DGEAYTSDPD SFPGSMEKNA  600
PDSLYDVPVH STDHQARSMD NTSKLKSNTP ETMKVGSDTE MKKESSALGL LAMTYGNSSD  660
SDEDDLLPNC PVVSEDNMSG DGSWGARFHQ DDSASPNFEQ SYDSGVERGP SQVSSRSECE  720
DEDSPQRFEV YGNCGHRRVN GDDNDYESHN CSAKFTEEDT LTSEQHYSPM VDEHDTAKIS  780
CAIDPVSKPN LSFAHRCDED SSRMHVFCLE HALEVEKQLR PIGGVHILLL CHPDYPNVEV  840
EAKKVAEELE MDYVWKDVAF SVATKEDEER IHMALQSEEA TPKNGDWAVK LGINLFYSAI  900
LSRSPLYNKQ MPYNSVIYSA FGCSSPSKSS QEAKVFGKGF GRQKKLVMAG KWCGKVWMSN  960
QVHPLLLHRD LDGEDSVLNP CLKSDEKVGR KSETSYKAPT TDTNRKLGKK RKSMARSNIV  1020
KKMKFEVTEF ADTDPEDSVD DKPEFETRKS VRKPKAQCRP IKRVKHRKED IPDIMSEDSQ  1080
DELEFHQGPL KSARALKQGT KQNLKAKGHQ SVATIDSYSD DDSLDDRSHQ HGLRSCNRKL  1140
KAEGKSTRKV KPQPEEIVDS GESEGSPSDE SEREEHRGNI KSPGYSQRRV PDFKEFEPVT  1200
DDDERDGGPS TRLRRRSVRP TQERRETKAA VKRQVQNSKG KKAPPVTKNA GPARKGPKMR  1260
LPVSRAPAMK GPARKNPSLS SDDANAEEEA EFCCDIEGCT MSFGSKQELA LHKRNICPVK  1320
GCGKKFFSHK YLVQHRRVHM DDRPLKCPWK GCRMTFKWAW ARTEHIRVHT GARPYVCNEP  1380
GCGQTFRFVS DFSRHKRKTG HSAKKTRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-71194198383Transcription factor jumonji (Jmj) family protein
6ip4_A2e-71194198383Arabidopsis JMJ13
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667395.10.0PREDICTED: lysine-specific demethylase REF6 isoform X1
TrEMBLA0A0J8B6950.0A0A0J8B695_BETVU; Uncharacterized protein
STRINGXP_010667395.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6