PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv_008670_xkao.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

C2H2

Protein Properties

Length: 181aa MW: 20434.8 Da PI: 8.3297

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv_008670_xkao.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	25	47	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cg+ F ++ L H++ H Bv_008670_xkao.t1 25 FICKYCGRKFYNSQALGGHQNAH 47 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.24E-7	23	51	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.3E-4	23	51	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	12.071	25	52	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	27	47	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MNNMQGSKDY DSYSSRPNSV PFKIFICKYC GRKFYNSQAL GGHQNAHKKE RKEAQNHKQV 60 MRSMMMMASS SSTPLIPEAF MQPRGMSSHQ ITADHYSFNG NLSYVNCNNN GMSEYPVSSN 120 YWVGNNCLDD GARYSNVPAA GITNQFHHDD GAEHHKVEKG SRRLSQALEL QLPDLNLDPL 180 H

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010667423.1	1e-136	PREDICTED: zinc finger protein 3
TrEMBL	A0A0J8B2R3	1e-134	A0A0J8B2R3_BETVU; Uncharacterized protein
STRING	XP_010667423.1	1e-135	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14010.1	2e-12	C2H2 family protein