PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv_009300_xpqm.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Protein Properties

Length: 227aa MW: 25391.1 Da PI: 9.8453

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv_009300_xpqm.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.9	1e-14	132	218	4	98
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++ps+v+ +l lp +f+++ ++ +++ ++tl de g+++ v + rk++ l++GWk+F++ ++L +gD v+F+++++s +v Bv_009300_xpqm.t1 132 PMLPSHVTGGFWLGLPSDFCRTS-LP-RNDGMVTLVDEVGEEYPVVYLARKRG----LSGGWKGFAETHELVDGDAVIFQVISHSVL--KVY 215 6899**************777.34.34559***********555555....9********************8876655..888 PP EE- CS B3 96 vfr 98 ++r Bv_009300_xpqm.t1 216 IIR 218 777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.34E-21	125	220	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.8E-17	126	220	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.63E-22	127	218	No hit	No description
SMART	SM01019	5.3E-19	129	220	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.139	129	220	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.8E-13	132	219	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MGNLSYEECR QKRVEENKKR LEDLNLFHLS QALKNLSPKS SPMKKVGKPR TVEKKMVAVR 60 RSPRVANSPA PVYAEVSVTR ISSPRKNYGV VRARDLSNRV IATDDVREYA IEEAEKLNAK 120 LNEEGFPTLV RPMLPSHVTG GFWLGLPSDF CRTSLPRNDG MVTLVDEVGE EYPVVYLARK 180 RGLSGGWKGF AETHELVDGD AVIFQVISHS VLKVYIIRGS GQEVGTH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010667517.1	1e-167	PREDICTED: B3 domain-containing protein At5g42700
Swissprot	Q9FMZ4	4e-64	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A0J8B623	1e-166	A0A0J8B623_BETVU; Uncharacterized protein
STRING	XP_010667517.1	1e-167	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-66	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]