PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_011640_gojq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 322aa    MW: 36631.8 Da    PI: 7.477
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_011640_gojq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12186211126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        y   +C+++ +tG+C yGd+CkF+H+
  Bv_011640_gojq.t1 186 YQPDICKDYKETGYCGYGDSCKFMHD 211
                        67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.83E-9184216IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878185213IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7185212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12186216IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10186211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.9E-13246309IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578505.71E-12261304No hitNo description
PfamPF139202.5E-7261301No hitNo description
PROSITE profilePS5008910.424262300IPR001841Zinc finger, RING-type
SMARTSM001844.4E-4262299IPR001841Zinc finger, RING-type
CDDcd001624.08E-7262299No hitNo description
PROSITE patternPS005180277286IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MSEASEQESV EQVCNFVRKP MKNKNIRKRP SALDEVEDDD KESSVLHTTK RADMSDNKLY  60
FSSGTSKRSA SAESTKDSKN VLFQYESSKE IQVQNDSKAT ATLETETDFS RDARAIRERA  120
LKKAEEALKG KSKTSGDGKV YKGINSYTDY RAGFRREQTL AAEKAGGAHG PLRASAHIRV  180
SARFDYQPDI CKDYKETGYC GYGDSCKFMH DRGDYKSGWQ MEKEWDDAEK LRKRNLALGG  240
HSDEDNAEHE EEDDEDSLPF ACYICRQPFV DPVMTKCKHY FCEHCALKHH SKSKKCFVCD  300
QATLGIFNTA HEIRKRMAAE KK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M9e-7033174317RING finger protein 113A
5z58_M9e-7033174317RING finger protein 113A
6ff4_t9e-7033174317RING finger protein 113A
6ff7_t9e-7033174317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667731.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-160C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A0J8B5U20.0A0A0J8B5U2_BETVU; Uncharacterized protein
STRINGXP_010667731.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-140C3H family protein