PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_011650_foiy.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 182aa    MW: 20317.4 Da    PI: 6.676
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_011650_foiy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.77.4e-07163182120
                        --S---SGGGGTS--TTTTT CS
            zf-CCCH   1 yktelCrffartGtCkyGdr 20 
                        y   +C+++ +tG+C yGd+
  Bv_011650_foiy.t1 163 YQPDICKDYKETGYCGYGDS 182
                        67789*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.836162182IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-6163182IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4163182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MNNKNIRKRP SPLDDAEDDG KDTKTGSYMS HNGKRLAISD NRLYFLTGTS EHMDSKNVLF  60
QCESSKEIQV QNDSKVTATL ETETDFSRDA RAIQERALKK AEEALEGKNK TSGDVKLYKG  120
INSYTDYRAG LHHQQTLAAE KASGDYGPLR ASVHVRVSAG FDYQPDICKD YKETGYCGYG  180
DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-225818298216RING finger protein 113A
5z58_M4e-225818298216RING finger protein 113A
6ff4_t4e-225818298216RING finger protein 113A
6ff7_t4e-225818298216RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667739.11e-131PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX843e-68C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A0J8B5K11e-133A0A0J8B5K1_BETVU; Uncharacterized protein
STRINGXP_010667739.11e-130(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.14e-64C3H family protein