PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv_013090_tsop.t2

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Protein Properties

Length: 192aa MW: 22021.3 Da PI: 9.8097

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv_013090_tsop.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55	1.5e-17	93	189	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.se 89 f++++ +s+v+ + l +p ++a+ + ++ + k+++l+ ++g+s++vk+ +++ + l +GWk+Fv +n+L++gD ++F+l+ ++ s+ Bv_013090_tsop.t2 93 FKSIMYHSHVTYKYKLAVPSSHASIYFSS--KCKEIILNGPNGKSYSVKV--YVGKKITELLNGWKSFVLDNDLQVGDACIFELInkNSrSK 180 788999***************888766..5679***********..44444555666******************984222355 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++v++fr Bv_013090_tsop.t2 181 NAYKVSIFR 189 556666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.0E-21	88	190	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	5.3E-21	88	189	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.36E-21	91	189	No hit	No description
SMART	SM01019	9.3E-12	93	191	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.662	93	191	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.1E-16	93	189	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MRKVSCAMKR KYDLKNKVVE EENEEDDISI EILDEFSPKL KQVKTTVSLD SSAIYDVECS 60 SYKSKGNDKI SVDMRQKRLK RKLDAFVSSY PHFKSIMYHS HVTYKYKLAV PSSHASIYFS 120 SKCKEIILNG PNGKSYSVKV YVGKKITELL NGWKSFVLDN DLQVGDACIF ELINKNSRSK 180 NAYKVSIFRI SS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010667920.2	1e-135	PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBL	A0A0J8DW25	1e-136	A0A0J8DW25_BETVU; Uncharacterized protein
STRING	XP_010667920.1	1e-135	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-07	B3 family protein