PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_013140_rqgk.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family M-type_MADS
Protein Properties Length: 364aa    MW: 39671.1 Da    PI: 9.4076
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_013140_rqgk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.66.7e-23954146
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                       k+ie++s r vtfskRr gi+KKA+E+S+LC+aeva+i+fs+ gk 
  Bv_013140_rqgk.t1  9 KKIESSSSRLVTFSKRRSGIFKKANEISTLCAAEVAIIVFSPGGKP 54
                       68****************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.703161IPR002100Transcription factor, MADS-box
SMARTSM004323.3E-33160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-27279IPR002100Transcription factor, MADS-box
CDDcd002651.25E-33271No hitNo description
PRINTSPR004044.3E-20323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-203859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGRRKVEMKK IESSSSRLVT FSKRRSGIFK KANEISTLCA AEVAIIVFSP GGKPFSFGQP  60
NIEKVVHKFQ NKYQRQQSYK GEDDFTPLKM KSPKHLVEIL SLANRSVHLA TRAVEANVVQ  120
AKPKSVYRHA KANVHMKSGG FQNSAPKFGK KKDMGIVFKD PVVKKVSPSI APVHGKGKGK  180
ALVFASAPQY GNMFDSDDDT VLEAFPPILP SSGASQAAMI DFSSKEAGEG VGCDLAPPIV  240
ADIELSPIPL QVVYPGEFFE GNQFGPLVHL AEQQFGGYSM FESDVENDTM ILHNEDRTCD  300
DIPANHDSPF HSIDSASSIV RHISSLGVER DPPMEPTSLS SASKRRKGNS EDDSASSGVK  360
RYKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-14191191MEF2 CHIMERA
6byy_B2e-14191191MEF2 CHIMERA
6byy_C2e-14191191MEF2 CHIMERA
6byy_D2e-14191191MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687071.11e-100PREDICTED: uncharacterized protein LOC104901222
TrEMBLA0A0J8B5F60.0A0A0J8B5F6_BETVU; Uncharacterized protein
STRINGXP_010687071.11e-100(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-29AGAMOUS-like 29