PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv_015870_rhiy.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

FAR1

Protein Properties

Length: 135aa MW: 15281.5 Da PI: 8.9358

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv_015870_rhiy.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.9	1e-10	55	110	1	57
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtrae 57 kfY++YA ++GF++rks+++k+ ++g + + C+k g++e++k+k+e++ ++++ Bv_015870_rhiy.t1 55 KFYDAYALHCGFNTRKSTTNKN-KSGVVAIKYCLCNKAGFKEKRKTKNEDKPKEQED 110 6***************9999.67778888889********9996665555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.0E-8	55	115	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
ESALVLSSFS TSTWVTPRAR PFVTPGGTRE WMPLCSNELT PVLGMKFDSL EEGIKFYDAY 60 ALHCGFNTRK STTNKNKSGV VAIKYCLCNK AGFKEKRKTK NEDKPKEQED GKATTRKSFL 120 VAMDLFHDMQ PEELF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010668319.1	3e-77	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A0J8B4E5	1e-96	A0A0J8B4E5_BETVU; Uncharacterized protein (Fragment)
STRING	XP_010668319.1	1e-76	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	6e-08	FAR1-related sequence 12