PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_016000_frag.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family LBD
Protein Properties Length: 74aa    MW: 8207.74 Da    PI: 8.8855
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_016000_frag.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26047.94e-15465157
             DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeereda 57
                       +C++C+vlr++C++dCv++p++      ++q++++ +++k++G++ +l+ll+a p++ r+ +
  Bv_016000_frag.t1  4 SCNGCRVLRKGCSDDCVIRPCLqwmksSDAQANATVFLAKFYGRAGLLNLLNAGPDHLRPGI 65
                       6*********************9998666889************************999866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089110.845374IPR004883Lateral organ boundaries, LOB
PfamPF031959.0E-12464IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MRTSCNGCRV LRKGCSDDCV IRPCLQWMKS SDAQANATVF LAKFYGRAGL LNLLNAGPDH  60
LRPGIFLLLF CLVF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838468.13e-40LOB domain-containing protein 40-like
SwissprotQ9M8861e-39LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A0J8B1325e-47A0A0J8B132_BETVU; Uncharacterized protein
STRINGBra021433.1-P4e-39(Brassica rapa)
STRINGBo1g156310.14e-39(Brassica oleracea)
STRINGBostr.1460s0172.1.p4e-39(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-33LOB domain-containing protein 41