PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_016700_rsmq.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HB-other
Protein Properties Length: 210aa    MW: 23170 Da    PI: 7.0423
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_016700_rsmq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.63.6e-0731752256
                       SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
           Homeobox 22 nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                        + p +e+  eLA+k            ++ +qV +WFqNrR+  +
  Bv_016700_rsmq.t1 31 GHVPAREHLVELAQKFsnsperagkiTVQMKQVWNWFQNRRYALR 75
                       56788888888888888888888888999************9665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-9775IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-61378IPR009057Homeodomain-like
PROSITE profilePS500719.1991377IPR001356Homeobox domain
CDDcd000867.12E-51377No hitNo description
PfamPF000461.6E-43274IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRPPTHGAP SFRFHPAEVA HMEAVLRDHG GHVPAREHLV ELAQKFSNSP ERAGKITVQM  60
KQVWNWFQNR RYALRSKLVK SPNPRDMPPN PRDEVAVAPL RMVPPAPQQT LVPSGHNVIR  120
NASENPPMEF EAKSARDGAW YDVQAFLSHR YLETGNPTVT VLEAEKVGSS EPSEPTMPVS  180
TAITDGDPTV SKMEESSNVN VSAEHTNGLS
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010668440.11e-154PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ75e-51SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A0J8B4651e-153A0A0J8B465_BETVU; Uncharacterized protein
STRINGXP_010668440.11e-153(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.12e-50sequence-specific DNA binding transcription factors;sequence-specific DNA binding