PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_017190_rxhh.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family ERF
Protein Properties Length: 205aa    MW: 22052.9 Da    PI: 4.8859
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_017190_rxhh.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.4e-163987255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        y+G+  +++ g+Wv+eIr+p++   ++r++lg++ tae+Aa+a++aa+++l+g
  Bv_017190_rxhh.t1 39 LYRGI--RPRGGKWVSEIREPKK---TTRIWLGTWATAEMAAAAYDAAALALKG 87
                       69***..699**********854...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-173996IPR016177DNA-binding domain
SMARTSM003803.2E-2739101IPR001471AP2/ERF domain
PROSITE profilePS5103219.193995IPR001471AP2/ERF domain
PfamPF008475.4E-83987IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-263996IPR001471AP2/ERF domain
PRINTSPR003671.4E-64051IPR001471AP2/ERF domain
PRINTSPR003671.4E-67797IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
YYQPPLPPPP PPHPAIGGSS MFSVSPPKFI GSPTGKHPLY RGIRPRGGKW VSEIREPKKT  60
TRIWLGTWAT AEMAAAAYDA AALALKGTEA ILNFPQDALR YPVPPSSSAA DIRKAAATAA  120
AMKQDKEKNS STTTNADDLG LERVGKQGAE EEFIDIEAFF NMPNLLVDMA GGMMVSPPRM  180
SSTDDRDSPE NDDCIGEAGS LWSYD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-143595363ATERF1
3gcc_A6e-143595363ATERF1
5wx9_A9e-1436971174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010669007.11e-134PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ901e-46ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0J8BG191e-148A0A0J8BG19_BETVU; Uncharacterized protein (Fragment)
STRINGXP_010669007.11e-133(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-32ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]