PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_017650_gaui.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HB-other
Protein Properties Length: 222aa    MW: 25433.3 Da    PI: 6.7953
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_017650_gaui.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14.1e-2068123257
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                        ++R+  t++ql++Le+++++++yp++++++eLA++lgLte+q++ WF+ rR k+k+
  Bv_017650_gaui.t1  68 KRRRFKTPSQLQALEDFYNEHKYPTESMKAELADHLGLTEKQISGWFCHRRLKDKR 123
                        6777789***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.43.101.0E-131344IPR016167FAD-binding, type 2, subdomain 1
PfamPF009412.1E-41345IPR002346Molybdopterin dehydrogenase, FAD-binding
Gene3DG3DSA:1.10.10.608.8E-2149123IPR009057Homeodomain-like
PROSITE profilePS5007116.95764124IPR001356Homeobox domain
SuperFamilySSF466893.59E-1866131IPR009057Homeodomain-like
SMARTSM003892.2E-1967128IPR001356Homeobox domain
PfamPF000461.1E-1768123IPR001356Homeobox domain
CDDcd000861.76E-1768123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDLSGTDLCH FNLFELKSKY PDARLVIGNT EVGIEMRLKR MQYKSQGFTG ETNELQGEEN  60
KALPEKNKRR RFKTPSQLQA LEDFYNEHKY PTESMKAELA DHLGLTEKQI SGWFCHRRLK  120
DKRIVNGELN PPGRQDLSSG VIQDRGSGLR QDSCSSTKQG DYRLSDVREV ESRRFGHNDL  180
PAAEIKYERR MLDDGTEMDD TSSESNSALP GSFYPHNRSP LN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673742.11e-121PREDICTED: homeobox-DDT domain protein RLT1
TrEMBLA0A0J7YNI61e-165A0A0J7YNI6_BETVU; Uncharacterized protein (Fragment)
STRINGXP_010673742.11e-120(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.16e-47HB-other family protein