PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_019070_phsj.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 226aa    MW: 24474.8 Da    PI: 6.4939
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_019070_phsj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-061335326
                       S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                       t++C ++++   C +G  CkF H+
  Bv_019070_phsj.t1 13 TKICEHWMK-NSCVHGKDCKFLHS 35
                       789******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.2E-6834IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8681037IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-51135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.103.0E-3335221IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.9E-74180IPR001680WD40 repeat
SuperFamilySSF509789.16E-3643222IPR017986WD40-repeat-containing domain
PfamPF004003.6E-74680IPR001680WD40 repeat
PROSITE profilePS5029422.93948226IPR017986WD40-repeat-containing domain
PROSITE profilePS5008215.0874889IPR001680WD40 repeat
PROSITE patternPS0067806781IPR019775WD40 repeat, conserved site
PRINTSPR003203.7E-76781IPR020472G-protein beta WD-40 repeat
SMARTSM003209.1120157IPR001680WD40 repeat
PRINTSPR003203.7E-7144158IPR020472G-protein beta WD-40 repeat
SMARTSM003204.9E-5164201IPR001680WD40 repeat
PfamPF004001.4E-4168201IPR001680WD40 repeat
PROSITE profilePS5008214.819171210IPR001680WD40 repeat
PRINTSPR003203.7E-7188202IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780188202IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
ATTGDVEKSQ YCTKICEHWM KNSCVHGKDC KFLHSWCYGD GITMVAQLQG HKKAVTGITL  60
PADSDKLFSG SKDGTVRVWN CHTGECIGVA DVGSPVESLI SEGPWVLAGL VNSVKVWNIQ  120
SNAEFTLSTS AGQVYTMVAA NGMLFAGAQD GSILVWKFNA ESSSFDSISP LKGHSGAVVS  180
LIYGANRLYS GSMDNTIRVW DLETMQCIHT LAKHSEVVMS VLCWER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A6e-211822111323Tako8
6g6n_A6e-211822111323Tako8
6g6n_B6e-211822111323Tako8
6g6n_C6e-211822111323Tako8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687795.11e-158PREDICTED: zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ23e-85C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A0J7YN541e-166A0A0J7YN54_BETVU; Uncharacterized protein (Fragment)
STRINGXP_010687795.11e-157(Beta vulgaris)
STRINGXP_010692356.11e-157(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-87zinc finger WD40 repeat protein 1