PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_020640_hzaw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 129aa    MW: 14587 Da    PI: 9.1083
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_020640_hzaw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.11.1e-11430127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ykte Cr +++ G+C+y  +C+FaHg+
  Bv_020640_hzaw.t1  4 YKTEMCRLWSEQGQCPYNQKCQFAHGE 30
                       9************************96 PP
2zf-CCCH34.73e-114266125
                       --S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaH 25
                       ykt+ Cr+f+  G+C++G+rC F+H
  Bv_020640_hzaw.t1 42 YKTVKCRRFHDEGFCPFGPRCAFIH 66
                       9************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.8E-18236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.577331IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-7330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-11334IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-8430IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-113768IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-83869IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-74168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1174169IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-84266IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
ASKYKTEMCR LWSEQGQCPY NQKCQFAHGE PELRPLHRHH LYKTVKCRRF HDEGFCPFGP  60
RCAFIHKETS AQIVVGVSSP APVTHSVPMA LPLDLLLPIA APDAMRKSTK SLTNDILLRP  120
SQFVLTPSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-23167167Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002980683.13e-22mRNA decay activator protein ZFP36L1
SwissprotP479803e-24TIS11_DROME; Protein TIS11
TrEMBLA0A0J8DUP29e-92A0A0J8DUP2_BETVU; Uncharacterized protein (Fragment)
STRINGXP_003493231.14e-26(Bombus impatiens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-18C3H family protein