PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_024660_ygrk.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 134aa    MW: 14674.6 Da    PI: 9.905
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_024660_ygrk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.32e-115479126
                       --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                       +kt++Cr+++++G C+y  +C+FaHg
  Bv_024660_ygrk.t1 54 FKTAICRTYSQFGSCPYEHKCRFAHG 79
                       79***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.8E-164887IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-105086IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-65380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3425381IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-85479IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MAHTVPTSIR SISTQQIPTF ASDLKSVQIT LSPAATDHSD ENAQKKSVCN PQLFKTAICR  60
TYSQFGSCPY EHKCRFAHGL SDLRPVPRFK SMSSAGPTSA PTTSQIFNAF QKSGDDAKIQ  120
RSHSTSPVLY PIKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0J8AZB61e-93A0A0J8AZB6_BETVU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.21e-09C3H family protein