PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_024770_ahsw.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C2H2
Protein Properties Length: 222aa    MW: 25216.3 Da    PI: 6.9067
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_024770_ahsw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.00019120141223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        +C +C+k+F +   L+ H r H
  Bv_024770_ahsw.t1 120 VCDHCDKTFHQTNALRIHERQH 141
                        7*******************95 PP
2zf-C2H212.50.00044149170223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        +C+ Cg  F ++  L+rHi  +
  Bv_024770_ahsw.t1 149 QCHRCGAGFHSQAPLERHILEC 170
                        8******************876 PP
3zf-C2H214.20.00013198218323
                        ETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                        C+ C+k+F++    ++H+ ++
  Bv_024770_ahsw.t1 198 CSVCSKPFTSAAAIEKHLLSC 218
                        *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355112750IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.39E-52875No hitNo description
PROSITE patternPS0002802950IPR007087Zinc finger, C2H2
SMARTSM00355415676IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.55E-8118167No hitNo description
Gene3DG3DSA:3.30.160.602.5E-5118142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.011119147IPR007087Zinc finger, C2H2
SMARTSM003550.014119141IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-4121143IPR007087Zinc finger, C2H2
PROSITE patternPS000280121142IPR007087Zinc finger, C2H2
SMARTSM0035547148168IPR015880Zinc finger, C2H2-like
SMARTSM00355130196216IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
SDTAAADDHI TGPISSKRKA KPDPSANQCR FCQETFKWSH IRNVHEREKH PELCPLHCPT  60
CNAPFHTQAP LDRHIQNNCG RGDREKDDDE ESHQSEAPPT TKLRPRRSSV IIPEEPPPIV  120
CDHCDKTFHQ TNALRIHERQ HHPEHCPLQC HRCGAGFHSQ APLERHILEC LAPEPEPMEI  180
EEDFTPKRPY HPPEPMACSV CSKPFTSAAA IEKHLLSCSK RS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0J8B2L71e-159A0A0J8B2L7_BETVU; Uncharacterized protein (Fragment)