PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_025340_oumk.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family C3H
Protein Properties Length: 236aa    MW: 25723.7 Da    PI: 10.4872
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_025340_oumk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.83.8e-1386111126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        yktelCr ++ +G+C+y ++C+FaHg
  Bv_025340_oumk.t1  86 YKTELCRSYSDNGYCRYSNKCQFAHG 111
                        9************************9 PP
2zf-CCCH34.63.3e-11124148126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kte C++f+  G C+yG+rC F+H 
  Bv_025340_oumk.t1 124 WKTEKCKNFLN-GSCPYGSRCDFIHH 148
                        8**********.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.1E-1781118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-1085116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.58285113IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-885112IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-1086111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-7119150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-12119149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.272123150IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-7123149IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8124148IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
RSATITATRP KRSGGRQKAM ASSSELWSVS TWSPGTTGRD DWSFVPSSSQ LPKASSGYHS  60
RSKSADNSPS REGSGLSQYA HNSSLYKTEL CRSYSDNGYC RYSNKCQFAH GLQDLRPVVR  120
HRRWKTEKCK NFLNGSCPYG SRCDFIHHDD LIYTASDPLV PLFTESPSRQ FRGLSVKSPA  180
FIPSVTGKTA STPRFSTPLT DPPKVQTPKK SASSSPPAPI GKSKSTANMS PPAPIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A5e-2483147772Tristetraproline
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0J8AZB71e-171A0A0J8AZB7_BETVU; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.26e-21C3H family protein