PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_026410_hops.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family NF-YB
Protein Properties Length: 250aa    MW: 27463.1 Da    PI: 9.7466
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_026410_hops.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB74.81.3e-231771794
              NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94
                       mk++lP  a +s+dak  vq cv efi f+tseasd+  +  rk i+++d+l+a+ +lGf++y +  ++y+ +yr   
  Bv_026410_hops.t1  1 MKRALPPGAFVSNDAKRAVQRCVCEFICFLTSEASDRGGK-ARKVIESEDILHAFRHLGFHQYSDLCQTYIDRYRSQF 77
                       9************************************987.69********************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008083.2E-8153IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471139.22E-17195IPR009072Histone-fold
Gene3DG3DSA:1.10.20.105.8E-22181IPR009072Histone-fold
PRINTSPR006151.9E-51937No hitNo description
PRINTSPR006151.9E-55674No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MKRALPPGAF VSNDAKRAVQ RCVCEFICFL TSEASDRGGK ARKVIESEDI LHAFRHLGFH  60
QYSDLCQTYI DRYRSQFRND TTVISQPQYH PTSHPPASLS PNSRRRPRAT FTSAPQSKHL  120
RRADNNPDIH AFKSLYDVSI EVASSLVYAW SSPILETALY LAASPATTPA AAPADPAAVS  180
PMFLSRLQNM SMMSPAMLPE QAPAPPSMML SGSRYAFSSY NALQAAARRG ITVQNLILQN  240
SAANSLSQQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-151751792Transcription factor HapC (Eurofung)
4g92_B2e-151751792Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0J8AYR70.0A0A0J8AYR7_BETVU; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.84e-20nuclear factor Y, subunit B1