PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_030250_atid.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family HSF
Protein Properties Length: 241aa    MW: 26953.9 Da    PI: 9.9409
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_030250_atid.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind61.71.8e-1926632103
                        -HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
       HSF_DNA-bind  32 deeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                        d + +a +vLpk+Fkh nfaSFvRQL+ YgF+k++  ++         eF+h++F  g+ +ll+ i rk+++
  Bv_030250_atid.t1   2 DANVLAAEVLPKFFKHGNFASFVRQLHFYGFSKTTLMNGG-------SEFRHPNFIYGRMDLLHLISRKSTD 66 
                        5677999*******************************99.......9*********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.8E-6163IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.8E-16257IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-15263IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.4E-15263IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.8E-71022IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-72335IPR000232Heat shock factor (HSF)-type, DNA-binding
CDDcd146860.0098561104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
KDANVLAAEV LPKFFKHGNF ASFVRQLHFY GFSKTTLMNG GSEFRHPNFI YGRMDLLHLI  60
SRKSTDTITK QRSQIDDLQQ QVMYLRQQNE QLLMEHRRIM SLVSSKDPAA LNSICPTLPT  120
QIPYRTDGVI PDRTSSGGIP VPNMASREGS VASSSPILKP VLKAVCFNGT NNLLHMPPSP  180
SMHGISNLPG SRIPTAMVYH NPEYTMNNFQ QIMQYPDMSS NHAHVEIPAA VSAFKMNPRS  240
I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010668784.11e-179PREDICTED: heat stress transcription factor A-1b-like, partial
TrEMBLA0A0J8AXL91e-179A0A0J8AXL9_BETVU; Uncharacterized protein (Fragment)
STRINGXP_010668784.11e-179(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.13e-12heat shock transcription factor A8