PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_041240_fsje.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB_related
Protein Properties Length: 109aa    MW: 12665.6 Da    PI: 10.7324
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_041240_fsje.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.9e-072566346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                       +W+ +E   + + + +++++ + +Ia  ++ +++  +c+ ++++
  Bv_041240_fsje.t1 25 PWSDQEKAVFRKKFSKFPKN-FVKIATFLP-NKSVGDCVAYYYS 66
                       8*****************99.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.83E-15973IPR009057Homeodomain-like
PROSITE profilePS5129315.3922172IPR017884SANT domain
SMARTSM007171.4E-52270IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-42566IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MSWRSRNGLV EDPRAQDQYR KLINPWSDQE KAVFRKKFSK FPKNFVKIAT FLPNKSVGDC  60
VAYYYSSKTF VNYKALVKKY RQSLLSRKGI DITAQGHVEG IRSSRIDAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xc5_A1e-18574271Nuclear receptor corepressor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0J7YMU75e-75A0A0J7YMU7_BETVU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.19e-14MYB family protein