PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_00323
Common NameKK1_000333
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HD-ZIP
Protein Properties Length: 836aa    MW: 92172.3 Da    PI: 6.4699
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_00323genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-181573357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  C.cajan_00323 15 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73
                   5679*****************************************************97 PP
2START179.12.5e-561593672205
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g+++l +
  C.cajan_00323 159 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCAGVAARACGLVGLEPT-RVAEILKDRPLWFRDCRAVDVLNVLPTAngGTIELLY 253
                    7899******************************************************.8888888888****************9999******* PP

                    EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
          START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                    ++l+a+++l+p Rdf+ +Ry+  l++g++vi+++S+ ++q+ p+    +++vRae+lpSg+l++p+++g+s +++v+h+dl+ ++++++lr+l++s
  C.cajan_00323 254 MQLYAPTTLAPaRDFWLLRYTSVLEDGSLVICERSLKNTQNGPSmppVQHFVRAEMLPSGYLVRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYES 349
                    ******************************************9988899*********************************************** PP

                    HHHHHHHHHHHHTXXXXX CS
          START 188 glaegaktwvatlqrqce 205
                    +++ ++kt++a+l+++++
  C.cajan_00323 350 STVLAQKTTMAALRHLRQ 367
                    *************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5641074IPR001356Homeobox domain
SMARTSM003891.1E-151278IPR001356Homeobox domain
SuperFamilySSF466891.33E-161476IPR009057Homeodomain-like
CDDcd000861.31E-161575No hitNo description
PfamPF000465.8E-161673IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-181773IPR009057Homeodomain-like
CDDcd146868.32E-667106No hitNo description
PROSITE profilePS5084824.775149363IPR002913START domain
CDDcd088752.09E-79153368No hitNo description
SuperFamilySSF559614.67E-38158368No hitNo description
SMARTSM002341.7E-41158368IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-22158364IPR023393START-like domain
PfamPF018526.7E-54159367IPR002913START domain
SuperFamilySSF559618.24E-5395489No hitNo description
SuperFamilySSF559618.24E-5519594No hitNo description
PfamPF086704.5E-50693835IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MSCKDGSKIG MDNGKYVRYT PEQVEALERL YHDCPKPSSI RRQQLIRECP ILSNIEPKQI  60
KVWFQNRRCR EKQRKESSRL QGVNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYFRQHTQ  120
NTTQATKDTS CESAVTSGQH NLTTQHPPRD ASPAGLLSIA EETLAEFLSK ATGTAVEWVQ  180
MPGMKPGPDS IGIVAISHGC AGVAARACGL VGLEPTRVAE ILKDRPLWFR DCRAVDVLNV  240
LPTANGGTIE LLYMQLYAPT TLAPARDFWL LRYTSVLEDG SLVICERSLK NTQNGPSMPP  300
VQHFVRAEML PSGYLVRPCE GGGSIIHIVD HMDLEPWSVP EVLRPLYESS TVLAQKTTMA  360
ALRHLRQISH EVSQSNVTGW GRRPAALRAL SQRLSRGFNE ALNGFTDEGW TTIGNDGVDD  420
VTILVNSSPD KLMGLNLSFA NGFPSVSNAV LCAKASMLLQ NVPPAILLRF LREHRSEWAD  480
NNMDAYTAAA IKVGPCSLSG SRVGNYGGQV ILPLAHTIEH EEFLEVIKLE GVAHSPEDTI  540
MPREMFLLQL CSGMDENAVG TCAELISAPI DASFADDAPL LPSGFRIIPL ESGKEASSPN  600
RTLDLASALD VGPSGNRASN EYAGNSGCMR SVMTIAFEFA FESHMQEHVA SMARQYVRSI  660
ISSVQRVALA LSPSHLSSHA GLRTPLGTPE AQTLAHWICN SYRCYLGVEL LKSNNEGNES  720
VLKSLWHHSD AILCCTLKAL PVFTFSNQAG LDMLETTLVA LQDITLEKIF DDHGRKILFS  780
EFPQIIQQGF ACLQGGICLS SMGRPVSYER VVAWKVLNEE ENAHCICFMF VNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_00323
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020226142.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_020226143.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A151SHC30.0A0A151SHC3_CAJCA; Homeobox-leucine zipper protein ATHB-15
STRINGXP_007135643.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]