PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_00492
Common NameKK1_000509
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 386aa    MW: 42566.8 Da    PI: 9.6287
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_00492genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-0585107123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C++C+k F r  nL+ H r H
  C.cajan_00492  85 FICEICNKGFQRDQNLQLHRRGH 107
                    89*******************88 PP
2zf-C2H212.60.00043161183123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H +t+
  C.cajan_00492 161 WKCDKCSKKYAVQSDWKAHSKTC 183
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.7E-684107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.49E-784107No hitNo description
PfamPF121714.4E-585107IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.02285107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.84585107IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM00355190126156IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-4149182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.49E-7156181No hitNo description
SMARTSM00355150161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090502Biological ProcessRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0003676Molecular Functionnucleic acid binding
GO:0004526Molecular Functionribonuclease P activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MLNQQQQQQV VEENMSNLTS ASGEASASSG NRTELGTSTY PQQYLAPPPT QTQPAKKKRN  60
LPGNPDPDAE VIALSPKSLL ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTSKE  120
VRKKVYVCPE PTCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDWKAHS  180
KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARAM GAGTGNNTLL PPQPQPSTSH  240
HITQFNPQDH MHAFPLKKEQ QVPHMSATAL LQKAAEMGAT MTRPHHHAHV SSSAANNFGF  300
NLSSREDTTT TTTTTTSTTT TATLFNHGLL SSHKAAAAAA FGAGNEGLTR DFLGLRPLSH  360
SDILTIAGIG NCIHDQQNQS QKPWQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36157227372Zinc finger protein JACKDAW
5b3h_F3e-36157227372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111123KLKQRTSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_00492
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-169AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020227630.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-129IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A151SHJ40.0A0A151SHJ4_CAJCA; Zinc finger protein MAGPIE
STRINGXP_007135542.11e-174(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-105indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]