PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_00496
Common NameKK1_000513
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family LBD
Protein Properties Length: 301aa    MW: 34351.4 Da    PI: 6.5582
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_00496genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.33.5e-40161151100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                    aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k l ++++++am++++y++++ra+dPv G+++ il+lq q+e  +ael+l
  C.cajan_00496  16 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKFLTPHDKDQAMRTIIYQSDMRASDPVGGCYRYILDLQAQIEYYRAELEL 111
                    7*********************************************************************************************99 PP

         DUF260  97 lkee 100
                    + ++
  C.cajan_00496 112 ALQQ 115
                    8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.78315116IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-3716112IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MNRISSSRNG NSTTQACAAC KYQRRKCAPD CILAPYFPHD RQRQFLNAHK LFGVSNITKI  60
IKFLTPHDKD QAMRTIIYQS DMRASDPVGG CYRYILDLQA QIEYYRAELE LALQQLAIFR  120
AQDQAQHQQH AGIYAANSNV NVAVNGDGEV LNADPLGLYN QPQHHQYQCL PLQEQYVMVH  180
ENVHGSQNSN SNTPLQEQIN TWAVQNTAVS LSSLSLQGQS SNVSDEYDLK PGVIDLDSDE  240
RSELGFESEE LVHRRYVISF NISMHASRIS HFFSSFHDTY HLLYTYIHFS LLSLFLFLDV  300
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-271711612111LOB family transfactor Ramosa2.1
5ly0_B3e-271711612111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_00496
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020224993.20.0LOB domain-containing protein 22
TrEMBLA0A151SHT10.0A0A151SHT1_CAJCA; LOB domain-containing protein 22
STRINGGLYMA08G20550.21e-139(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-49LOB domain-containing protein 22