PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_00533
Common NameKK1_000551
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 422aa    MW: 48264.1 Da    PI: 4.9899
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_00533genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.8e-07525425
                   ---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                   + C+f+ar G C  Gd+C FaH
  C.cajan_00533  5 RVCKFYAR-GSCLKGDQCDFAH 25
                   57******.************* PP
2zf-CCCH23.97.3e-083051426
                   ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                     C+++++ G+C yG+rC++ H+
  C.cajan_00533 30 DVCSYYQK-GFCAYGSRCRYRHV 51
                   57******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.441125IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-4227IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5528IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6526IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.1222653IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-52650IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012852IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-42950IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-53051IPR000571Zinc finger, CCCH-type
SMARTSM003564798121IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287101122IPR000571Zinc finger, CCCH-type
SuperFamilySSF578506.52E-13154231No hitNo description
Gene3DG3DSA:3.30.40.101.7E-10157226IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001625.06E-4163226No hitNo description
PfamPF000976.8E-7164224IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.135164225IPR001841Zinc finger, RING-type
SMARTSM001849.0E-6164224IPR001841Zinc finger, RING-type
PROSITE patternPS005180188197IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.34254282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619254283IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016874Molecular Functionligase activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MNCLRVCKFY ARGSCLKGDQ CDFAHERKDD VCSYYQKGFC AYGSRCRYRH VKASQAWVPK  60
AVKSSSPDKH VRSSQQKNLS AHGNDVGESS NSSAVPSEYL FCAYAAANCP LEDKCSRIHG  120
NQCLYCRKFC LHPTDRKEKE NHLRTCEKKD KYLQALKDSQ EVECNVCLER VLSKPKPSDC  180
KFGLLPECDH AFCLSCIRNW RNSATNSGMD INNTANTVRT CPVCRKLSYF VIPSGIWYST  240
KEEKQEIIDN YKANCKLIDC KHFNFGNGNC PFGASCFYKH TVKPGSYTWI HHRPPPQRRQ  300
NNFGMYDMLD MLSEVDLSSA EYYSIMRESE FFDDMDPFEM MDISDRLAGE SGPCLGPFDS  360
DEEDMDFFQM AALSEALVSG VDDFGPEDFD EEFNPMEAAL LSMMMHSNIE DEDEEDYSDE  420
DF
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_00533
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020226080.10.0E3 ubiquitin-protein ligase makorin
SwissprotQ6IDS61e-107C3H35_ARATH; E3 ubiquitin-protein ligase makorin
TrEMBLA0A151SHM90.0A0A151SHM9_CAJCA; E3 ubiquitin-protein ligase makorin
STRINGGLYMA15G42820.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF151431113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-109C3H family protein