PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_00681
Common NameKK1_000700
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 270aa    MW: 30372.8 Da    PI: 7.2215
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_00681genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-1295141455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     h ++Er+RR+++ + f  L +l+P +     +K +Ka++L  A++Y+k+Lq
  C.cajan_00681  95 DHIIAERKRREKLSQQFIALSSLVPGL-----QKTDKASVLADAIKYLKQLQ 141
                    6999**********************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.34591140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-1795159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-1795155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.57E-1296145No hitNo description
PfamPF000104.2E-1096141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-1497146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
METALVDFER PTKHHQNMSW NPSKNAQTSE TEFVSFPNPF SFVGSNVISP LGLVKAMDEM  60
DCPITISSTT PLESTSQGTL SQKIGTRSKL THPQDHIIAE RKRREKLSQQ FIALSSLVPG  120
LQKTDKASVL ADAIKYLKQL QEKVRALEEE QNMKKNVESV VIVKKSQLSN DVNNNSLEYH  180
GQFDEALPEI EARFCERNVL IRVHCGKSKG VVEKTIQEIE KLHLTVTNSS AMIFGRCSLD  240
LTIIAQMDME FCMGVKDLVR NLHSAFTSFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-1392156569Transcription factor MYC2
5gnj_B6e-1392156569Transcription factor MYC2
5gnj_E6e-1392156569Transcription factor MYC2
5gnj_F6e-1392156569Transcription factor MYC2
5gnj_G6e-1392156569Transcription factor MYC2
5gnj_I6e-1392156569Transcription factor MYC2
5gnj_M6e-1392156569Transcription factor MYC2
5gnj_N6e-1392156569Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199104ERKRRE
2100105RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_00681
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020228720.10.0transcription factor bHLH19 isoform X1
RefseqXP_029129419.10.0transcription factor bHLH19 isoform X1
RefseqXP_029129420.10.0transcription factor bHLH19 isoform X1
RefseqXP_029129421.10.0transcription factor bHLH19 isoform X2
SwissprotQ9T0723e-54BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A151SI880.0A0A151SI88_CAJCA; Transcription factor bHLH25
STRINGXP_007159189.11e-138(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-56bHLH family protein