PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_00960
Common NameKK1_000987
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 330aa    MW: 35960.1 Da    PI: 6.1745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_00960genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.9e-10158202554
                    HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  C.cajan_00960 158 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 202
                    99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-15151212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-15155212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-7158202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MANNPSDAPA DDFLEQILGL PTFASADSAL AAADVALAAA PPMMLQLNSA DANAHLAGAA  60
FHAPVYQLGL SLDQGKGAFM KPEEASASGK RFRDDVVDAR AKNSILLFFP LFHMIFDSNP  120
QLCVYHGQPM PTSMPSAPHP PTIRPRVRAR RGQATDPHSI AERLRRERIA ERIRALQELV  180
PSVNKTDRAA MLDEIVDYVK FLRLQVKVLS MSRLGGAGAV APLVTDIPLS SVEVIIVKKY  240
LLKELHFDLF NDDQEEGGEG ARNRPAWDKW SNDGTERQVA KLMEENVGAA MQFLQSKALC  300
IMPISLASAI YQSQPPDTSS IVKPETNPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_00960
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150372e-93AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027350393.10.0transcription factor UNE12-like isoform X2
SwissprotO227681e-126UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A151SJ340.0A0A151SJ34_CAJCA; Transcription factor UNE12
STRINGGLYMA19G34360.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54493253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-113bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]