PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_01001

Common Name

KK1_001029

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

LBD

Protein Properties

Length: 167aa MW: 18422.6 Da PI: 7.8209

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_01001	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141	3.9e-44	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++++ +reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el++ C.cajan_01001 10 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPYQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVLRLQKELDA 105 7*********************************************************************************************99 PP DUF260 97 lke 99 +++ C.cajan_01001 106 TNA 108 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.758	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.2E-44	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MASSSYSNSP CAACKFLRRK CMPDCIFAPY FPPEEPQKFA NVHKIFGASN VSKLLNEVQP 60 YQREDAVNSL AYEAEARIKD PVYGCVGAIS VLQRQVLRLQ KELDATNADL IRYSCTEMPS 120 THHGMRRVSD DGGGGSSLGH SHGFSRPSTT SWNNDPYGNN GYPRGDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-66	7	118	8	119	LOB family transfactor Ramosa2.1
5ly0_B	2e-66	7	118	8	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_01001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020225072.1	1e-124	LOB domain-containing protein 25
Refseq	XP_029129408.1	1e-124	LOB domain-containing protein 25
Refseq	XP_029129409.1	1e-124	LOB domain-containing protein 25
Refseq	XP_029129410.1	1e-124	LOB domain-containing protein 25
Swissprot	Q8L8Q3	1e-67	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A151SJ66	1e-123	A0A151SJ66_CAJCA; LOB domain-containing protein 25
STRING	GLYMA05G08870.2	3e-94	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	6e-70	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]