PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_01372

Common Name

KK1_001406

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

LBD

Protein Properties

Length: 230aa MW: 24592.9 Da PI: 8.274

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_01372	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.6	5.3e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C+++Cvl+ ++ +++q +++ +v+k+FG++ ++++++++p+++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q++ C.cajan_01372 2 SCNGCRVLRKGCSDSCVLRTCLqwiqtAEAQGHATVFVAKFFGRAGLMSFISNVPQNQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAA 97 6*******************9998777889************************************************************** PP DUF260 92 aelall 97 +e++l+ C.cajan_01372 98 VETVLR 103 999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.862	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MSCNGCRVLR KGCSDSCVLR TCLQWIQTAE AQGHATVFVA KFFGRAGLMS FISNVPQNQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGALRPM PDLMALHAPA 120 LDETSEAEVG CTDIWRISDT SPNPNPSSCF TRSRSHGKVS SSGGGKRQRS EAQAAPNLDL 180 RLTPAFLQKV ESRRSGSPSM TSEESGTTTA CLESGFGGDG GDRKVLNLFI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_01372

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020227151.1	1e-169	LOB domain-containing protein 37
Swissprot	Q9SZE8	1e-81	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A151SKB3	1e-168	A0A151SKB3_CAJCA; LOB domain-containing protein 39
STRING	XP_007155842.1	1e-122	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	3e-79	LOB domain-containing protein 39