PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_01570
Common NameKK1_001608
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family YABBY
Protein Properties Length: 216aa    MW: 24156.6 Da    PI: 7.5558
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_01570genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY235.61.1e-72111802170
          YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee...lleelkveeenlksnvekeesast 94 
                    d+   seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++      +++ hl++s+  +   llee  + + n+ +n++++ sa++
  C.cajan_01570  11 DHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLMPSPTQFHLGHSFFSPshnLLEEIPNPSPNFLMNQQTNLSATN 106
                    577899***********************************************************9877445667777777777777777666666 PP

          YABBY  95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                    + s+    +   +e+pr+p ++rPPekrqrvPsaynrfik+eiqrik+ nPdi+hreafsaaaknWahfP+ihfgl
  C.cajan_01570 107 EFSMP--ARTVADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGL 180
                    66664..4777899***999******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.4E-7015180IPR006780YABBY protein
SuperFamilySSF470951.96E-7124173IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.104.6E-4129172IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSSSSTTLSL DHLPPSEQLC YVHCNICDTV LAVSVPCTSL FKTVTVRCGH CTNLLPVNMR  60
GLLMPSPTQF HLGHSFFSPS HNLLEEIPNP SPNFLMNQQT NLSATNEFSM PARTVADELP  120
RPPIINRPPE KRQRVPSAYN RFIKDEIQRI KSVNPDITHR EAFSAAAKNW AHFPHIHFGL  180
MPDQTVKKTN VCQQEGEEVL MKDGFYASAN VGVSPY
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_01570
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6172721e-180FJ617272.1 Lotus japonicus YABBY1 protein (YABBY1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020227262.11e-161protein YABBY 4 isoform X1
SwissprotQ01JG22e-82YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF02e-82YAB5_ORYSJ; Protein YABBY 5
TrEMBLA0A151SKN11e-160A0A151SKN1_CAJCA; Protein YABBY 5
STRINGGLYMA17G14710.11e-147(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20403490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.19e-84YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]