PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_01682

Common Name

KK1_001720

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

WRKY

Protein Properties

Length: 548aa MW: 59616.3 Da PI: 5.7371

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_01682	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.8	2.9e-30	239	298	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ C.cajan_01682 239 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCAEDMSILITTYEGTHNHT 298 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-31	224	300	IPR003657	WRKY domain
SuperFamily	SSF118290	3.53E-27	232	300	IPR003657	WRKY domain
PROSITE profile	PS50811	27.887	234	300	IPR003657	WRKY domain
SMART	SM00774	1.2E-35	239	299	IPR003657	WRKY domain
Pfam	PF03106	2.0E-26	240	297	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence Send to blast
MELASERSGD GGSGLKEEKR SEYSVGDDDG HHKQEIIVEE APVANTERSI PEAGPSASTS 60 QKEKVDEELE TTKAEMGVVR EENERLKMSL NKIMNEYRTL EMQFQDILKQ GTKKNGDKGN 120 EKHEEILEES DDLVSLSLGR VRSIPKNDEK MKVCKALKDE KGDLSLGLEF KFETSKSGSI 180 TEANLTNPSP ENSYEVPKEE AVETLKTMRD TCTEDEAAQQ NPAKKPRVCV RARCDTPTMN 240 DGCQWRKYGQ KIAKGNPCPR AYYRCTIAPS CPVRKQVQRC AEDMSILITT YEGTHNHTLP 300 PSATAMASTT SAAASMLLSG SSISSATTAT NLDNLNFYLS DHASKPRQLY LSNPALSSSP 360 SHPTITLDLT SPPPSSSSSS PFVRFTSTFN NQPRYPSSSS LSFSNTTTTQ PYGHRNMNIL 420 SGVNFGRQQV ESIYQSYMQK INSNNTAVPA DTISAATKVI TADPTFQSAL AAALTSFIGN 480 QGVSGVEESL GQKMKWEEAF PASNSSKVIN GFASSQTKSL MFLPPSSLPF STPKSASASP 540 AHNSDATD

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence Send to blast

MELASERSGD GGSGLKEEKR SEYSVGDDDG HHKQEIIVEE APVANTERSI PEAGPSASTS  60
QKEKVDEELE TTKAEMGVVR EENERLKMSL NKIMNEYRTL EMQFQDILKQ GTKKNGDKGN  120
EKHEEILEES DDLVSLSLGR VRSIPKNDEK MKVCKALKDE KGDLSLGLEF KFETSKSGSI  180
TEANLTNPSP ENSYEVPKEE AVETLKTMRD TCTEDEAAQQ NPAKKPRVCV RARCDTPTMN  240
DGCQWRKYGQ KIAKGNPCPR AYYRCTIAPS CPVRKQVQRC AEDMSILITT YEGTHNHTLP  300
PSATAMASTT SAAASMLLSG SSISSATTAT NLDNLNFYLS DHASKPRQLY LSNPALSSSP  360
SHPTITLDLT SPPPSSSSSS PFVRFTSTFN NQPRYPSSSS LSFSNTTTTQ PYGHRNMNIL  420
SGVNFGRQQV ESIYQSYMQK INSNNTAVPA DTISAATKVI TADPTFQSAL AAALTSFIGN  480
QGVSGVEESL GQKMKWEEAF PASNSSKVIN GFASSQTKSL MFLPPSSLPF STPKSASASP  540
AHNSDATD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-22	227	301	2	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_01682

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020225151.1	0.0	probable WRKY transcription factor 61
Swissprot	A0A3Q7GFB5	1e-113	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A151SL41	0.0	A0A151SL41_CAJCA; Putative WRKY transcription factor 72
STRING	XP_007155330.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	1e-68	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]