PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_01887

Common Name

KK1_001936

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

YABBY

Protein Properties

Length: 135aa MW: 15466.5 Da PI: 10.2933

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_01887	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	136.5	3.1e-42	35	108	96	170
YABBY 96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + + + +v++ v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl C.cajan_01887 35 NNRIAM-RPPTTHVTEERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 108 333333.3334556666789*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.2E-40	27	108	IPR006780	YABBY protein
SuperFamily	SSF47095	1.96E-8	51	101	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.1E-5	56	102	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MAAAFQSLST WQDVQGPGLL NPEYKIDTGS TSKYNNRIAM RPPTTHVTEE RVVNRPPEKR 60 QRVPSAYNQF IKEEIQRIKA NNPDISHREA FSTAAKNWAH FPHIHFGLML DNNNQAKMEN 120 VSEKHLMSRA ALLNK

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_01887

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095084	1e-159	BT095084.1 Soybean clone JCVI-FLGm-6P7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020225582.1	2e-98	axial regulator YABBY 5
Swissprot	Q8GW46	1e-51	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A151SLU3	6e-97	A0A151SLU3_CAJCA; Axial regulator YABBY 5
STRING	GLYMA17G12200.1	5e-88	(Glycine max)
STRING	XP_007155017.1	4e-88	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	4e-54	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]