PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_02335
Common NameKK1_002397
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family WRKY
Protein Properties Length: 313aa    MW: 35301.1 Da    PI: 6.738
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_02335genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.85.2e-34160217259
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dgy+WrKYGqK vk+s+fprsYYrCts +C+vkk+vers +dp+vv++tYeg+H+h+
  C.cajan_02335 160 EDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSVVVTTYEGQHTHP 217
                    8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381304.8E-1291313IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.801.3E-34144219IPR003657WRKY domain
SuperFamilySSF1182902.75E-29151219IPR003657WRKY domain
PROSITE profilePS5081131.881154219IPR003657WRKY domain
SMARTSM007742.0E-40159218IPR003657WRKY domain
PfamPF031062.0E-26160217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEKKEMAVKT EDAVGSSSFP CYNSNVYPFS SAFDFPEVEK NSLGFMELLG VQDYSPLLEL  60
PQLSTLSVPH HSTVKLASDN CSEVLNQLPA TPNSSSISSA SSDAVNDEQN KTLDQAEEDE  120
EEEEGQQKTK KQLKPKKTNQ KRQREPRFAF MTKSEVDHLE DGYRWRKYGQ KAVKNSPFPR  180
SYYRCTSVSC NVKKRVERSF TDPSVVVTTY EGQHTHPSPV MPRSGVSAGY ATNFGSVFPP  240
GNYLSQYQHQ HHNHQQQQLF NTLSSLSFPY NDSSAKNAGF TQERRLCNPG TNAFLRDHGL  300
LQDVVPSHML KEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-28149220778Probable WRKY transcription factor 4
2lex_A3e-28149220778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_02335
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5876970.0KM587697.1 Glycine max clone GmWRKY3 WRKY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020226824.10.0WRKY transcription factor 23
SwissprotO229002e-69WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A151SMU30.0A0A151SMU3_CAJCA; WRKY transcription factor
STRINGGLYMA02G01420.11e-174(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.14e-61WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]