PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_02642
Common NameKK1_002707
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26983.9 Da    PI: 9.8788
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_02642genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF95.91.8e-30959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krien++ rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++g+lye+ss
  C.cajan_02642  9 KRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSNRGRLYEFSS 59
                   79***********************************************96 PP
2K-box64.24.9e-22941741898
          K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                    ++   ++  +ie L+ + R+llG++L+++ + eLqqLe+q+e+sl+kiR++Kn+l++e ie+l+  e+ l e nk+Lr ++
  C.cajan_02642  94 KEGDVRMATKIEHLEVSRRKLLGDELDTCCIYELQQLENQIESSLNKIRARKNQLFRERIEKLKDEERCLLEVNKRLRDQY 174
                    555568999*********************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.029161IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-40160IPR002100Transcription factor, MADS-box
CDDcd002659.50E-39373No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-31323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.15E-30376IPR002100Transcription factor, MADS-box
PfamPF003191.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.82790180IPR002487Transcription factor, K-box
PfamPF014863.0E-2199173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010048Biological Processvernalization response
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVRGKTQMKR IENETSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSN RGRLYEFSSS  60
RCSSINKTVE RYQRKIKDQG VSNKGIHENT QPPKEGDVRM ATKIEHLEVS RRKLLGDELD  120
TCCIYELQQL ENQIESSLNK IRARKNQLFR ERIEKLKDEE RCLLEVNKRL RDQYRMQQQR  180
SWSDEDVELF TEKGGEEVET ELFIGRPERR MPLKLKPGTH CANKTYIAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-17160160MEF2C
5f28_B5e-17160160MEF2C
5f28_C5e-17160160MEF2C
5f28_D5e-17160160MEF2C
6byy_A6e-17160160MEF2 CHIMERA
6byy_B6e-17160160MEF2 CHIMERA
6byy_C6e-17160160MEF2 CHIMERA
6byy_D6e-17160160MEF2 CHIMERA
6bz1_A6e-17160160MEF2 CHIMERA
6bz1_B6e-17160160MEF2 CHIMERA
6bz1_C6e-17160160MEF2 CHIMERA
6bz1_D6e-17160160MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner. {ECO:0000269|PubMed:16778081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_02642
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Maintained at very low levels by the polycomb-group (PcG) proteins MSI1, CLF, and EMF2 via histone methylation (H3K27me3). Derepressed upon cold treatment (vernalization). {ECO:0000269|PubMed:16778081}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020226032.11e-168agamous-like MADS-box protein AGL14 isoform X1
RefseqXP_020226033.11e-168agamous-like MADS-box protein AGL14 isoform X1
SwissprotO827436e-71AGL19_ARATH; Agamous-like MADS-box protein AGL19
TrEMBLA0A151SNQ51e-167A0A151SNQ5_CAJCA; Agamous-like MADS-box protein AGL19
STRINGGLYMA05G03660.81e-131(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.12e-73AGAMOUS-like 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Suter L,Rüegg M,Zemp N,Hennig L,Widmer A
    Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.
    Plant Physiol., 2014. 166(4): p. 1928-42
    [PMID:25339407]