PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_02900
Common NameKK1_002969
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MIKC_MADS
Protein Properties Length: 152aa    MW: 17933.6 Da    PI: 10.1358
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_02900genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.12e-27959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krienk+nrqvtfskRr g++KKA E+S LCdae a+i+fs++ kl+eys+
  C.cajan_02900  9 KRIENKINRQVTFSKRRSGLFKKAREISLLCDAELALIVFSTRPKLFEYST 59
                   79***********************************************96 PP
2K-box76.19.4e-2678146472
          K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 
                    ++   +++a +e++ +e++kLk+++e Lqr+qR+ +Ge+LesL+l+ Lq+LeqqL+++lk+iRs+K +l
  C.cajan_02900  78 RQVGTNDQAPNENWATEHQKLKARMEVLQRNQRNCMGEELESLNLRGLQSLEQQLDSALKHIRSRKVKL 146
                    55555788889*******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.445161IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-35160IPR002100Transcription factor, MADS-box
CDDcd002652.34E-38279No hitNo description
SuperFamilySSF554555.23E-31291IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.6E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-1983147IPR002487Transcription factor, K-box
PROSITE profilePS5129711.26188152IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRSGLFK KAREISLLCD AELALIVFST RPKLFEYSTQ  60
PSTERILERY ERYSYAERQV GTNDQAPNEN WATEHQKLKA RMEVLQRNQR NCMGEELESL  120
NLRGLQSLEQ QLDSALKHIR SRKVKLCNLE CF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-19174173MEF2 CHIMERA
6byy_B4e-19174173MEF2 CHIMERA
6byy_C4e-19174173MEF2 CHIMERA
6byy_D4e-19174173MEF2 CHIMERA
6bz1_A4e-19174173MEF2 CHIMERA
6bz1_B4e-19174173MEF2 CHIMERA
6bz1_C4e-19174173MEF2 CHIMERA
6bz1_D4e-19174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_02900
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311771e-144KT031177.1 Glycine max clone HN_CCL_28 MADS transcription factor (Glyma05g07380.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020227938.11e-100truncated transcription factor CAULIFLOWER A
SwissprotQ401702e-69AGL8_SOLLC; Agamous-like MADS-box protein AGL8 homolog
SwissprotQ424293e-69AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A151SPQ91e-107A0A151SPQ9_CAJCA; Agamous-like MADS-box protein AGL8 isogeny
STRINGGLYMA05G07380.18e-83(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-70AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]