PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_02909
Common NameKK1_002978
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 519aa    MW: 57531.9 Da    PI: 9.4876
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_02909genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.2e-14257307255
                    HHHHHHHHHHHHHHHHHH.HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   2 rrahnerErrRRdriNsa.feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    r +h++ E+rRR++iN++ f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  C.cajan_02909 257 RSKHSATEQRRRSKINDRqFQMLRELIPHS----DQKRDKASFLLEVIEYIHFLQ 307
                    889*************9768*********9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.8E-22252329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-15253327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.887255306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.68E-13257311No hitNo description
PfamPF000103.4E-12257307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-11261312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MELPQARPLG TEGRKPTHDF LSLYSNSTAQ QDPRPSSQGS YLKTHDFLQP LERLETKTSA  60
KEEATDEISS AVQKPPTSVE HLLPGGIGTY SISHISYVNN NQRVPKPESS LFVRQATSTD  120
RNDDNSNCSS YTSSGFTLWE ESSGKRGKTG KENNAGEKPT LGESAAKLGQ WTSTERTSQS  180
FSNNRHSSFS SRSSSQTTGQ KNQSFIEMMK SARDSAPDEV LENEETFFLK KEPSNTQREL  240
RVKVDGKSTD QKPNTPRSKH SATEQRRRSK INDRQFQMLR ELIPHSDQKR DKASFLLEVI  300
EYIHFLQEKV HKYEGSFQGW SNEPEKLMPW RNNDKPAENF QPRATDNGSS PSPTLLFASK  360
VDEKNITISP TIPGSTQNLE SGLSTATTSK TMDHQAGIMN NKAFPIPIPS QLNFFTPTQI  420
EKELTIEGGA ISISSVYSKG LLHTLTHALQ SSGVDLSQAS ISVQIELGKQ ANIRPTVPVS  480
MCGAKDGEVH SNNQKMMRSR VASSGKSDQA VKKLKTCRS
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_02909
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-61AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020227619.10.0transcription factor BIM1 isoform X2
SwissprotQ9LEZ31e-121BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A151SPP90.0A0A151SPP9_CAJCA; Transcription factor BIM1
STRINGGLYMA17G08980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-118bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]