PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_03364
Common NameKK1_003442
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family bHLH
Protein Properties Length: 227aa    MW: 25511.8 Da    PI: 8.1117
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_03364genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.8e-1455101354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    r+h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+ve +k+L
  C.cajan_03364  55 RNHKEAEKRRRERINSHLDKLRTLLPCN-----SKTDKASLLAKVVERVKEL 101
                    58*************************8.....7*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.90452101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-1455111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-1155106No hitNo description
PfamPF000101.4E-1155101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1456110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-1258107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2607.3E-5142195No hitNo description
CDDcd048730.00133142206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MENSELFQLL KNTNDSFFNS ASSTMQRTFS YYPLELEAAS DALPSHEDKA LAALRNHKEA  60
EKRRRERINS HLDKLRTLLP CNSKTDKASL LAKVVERVKE LKQQISQITE SEAFPSESDE  120
VSVLSTSGDG GGGDGQIVFR ASLCCEDRSD LIPDLVEILR SLHLKTLKAE MATLGGRTRN  180
VLLVAADKEH SVESIHFLHN SLKSMLERSN SNDRSKRRRG LDRKFVP
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_03364
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029129117.11e-165transcription factor bHLH106 isoform X3
SwissprotO806749e-73BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A151SQS61e-164A0A151SQS6_CAJCA; Transcription factor bHLH106 family
STRINGGLYMA02G23590.21e-121(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.11e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]