PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_03707
Common NameKK1_003788
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family HB-PHD
Protein Properties Length: 707aa    MW: 80437.8 Da    PI: 9.7816
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_03707genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.7e-09488535953
                    HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HH...HHHHHHHHHHH CS
       Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLter...qVkvWFqNrRa 53 
                    ++ +e L ++F++n  p +++re L+k+lgL+++   qV+ WF+N R+
  C.cajan_03707 488 RDAVEKLRQVFAENELPPRSTREGLSKELGLDTEkkmQVSKWFKNARY 535
                    678999*************************8543449********97 PP
2PHD40.56.4e-14225280151
                    SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
            PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                    +C+ C+   ++ +++++lCd +Ck++fH+kCl+++l++e++p g   w+C+ C++k
  C.cajan_03707 225 FCAKCKMheEHPDNDIILCDgTCKRAFHQKCLDPPLDTENIPPGeqGWFCKFCDCK 280
                    699999977777********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579034.32E-14219283IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.2E-12223280IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.834223280IPR019787Zinc finger, PHD-finger
PfamPF006281.5E-11225280IPR019787Zinc finger, PHD-finger
SMARTSM002494.5E-9225278IPR001965Zinc finger, PHD-type
CDDcd155048.25E-30225277No hitNo description
PROSITE patternPS013590226277IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.604.0E-9472534IPR009057Homeodomain-like
SuperFamilySSF466891.58E-8475542IPR009057Homeodomain-like
PROSITE profilePS5007110.43477540IPR001356Homeobox domain
SMARTSM003891.8E-7479544IPR001356Homeobox domain
CDDcd000863.34E-7485544No hitNo description
PfamPF000461.9E-6488535IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MGDSEKKLNN KGSKKSSHLK AGTKCKGKKD KVKVVSKSHT KNVGTDISRK RVTDSSSKVK  60
GPRKDSSHKK LITGKNLPAK NRKSSQKPSS KLQGKKTSLS SRKEGKDADG VVKLQKMKRK  120
RKKKRQRNNV DLDDPLRFQR RTRYLLIKMK LEQNLIDAYS GEGWKGQSRE KIRPEKELQR  180
ARKQILKCRL GIRDAIRQLD SLGSLSSIED SAIAPDGSIY HGNIFCAKCK MHEEHPDNDI  240
ILCDGTCKRA FHQKCLDPPL DTENIPPGEQ GWFCKFCDCK MEILEAMNAH LGTHFSLHST  300
WQDVFKEEAA IPDGETALLN PEEEWPSDDS EDDDYDPERK EDSHYIHTEG TDDGVSDDLS  360
SSTSLCSSDG ECYPVDGFSH EYFSVNSSID SDESEEKACG RRQRKAVDYK KLYDEMFGKD  420
APAYEQLSED EDWGPGKRKR REKESDAVDS LMTLHESENK HPNYEHNNIT RKDSSSANIR  480
RHCFRIPRDA VEKLRQVFAE NELPPRSTRE GLSKELGLDT EKKMQVSKWF KNARYLALKN  540
RKHQAAEGAA DQLQSITSTK NSRLQNQENA DLLKPKTLKI TMTHSQKNVK NVTGRKKIKS  600
SSKKRQPEIP PPPGENGNKD FMEISDDVSL KKLLKKRKRL VNFKFEGDSQ AAEMEFERLS  660
KLKIKIDSMK QKLAAIQNYR VEGSNEPPNS NEPSIVYVPT AVLREKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116123MKRKRKKK
2118122RKRKK
3118124RKRKKKR
4121126KKKRQR
5437442RKRREK
6629637LKKLLKKRK
7631637KLLKKRK
8633639LKKRKRL
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_03707
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-151AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020228349.10.0pathogenesis-related homeodomain protein
RefseqXP_029129380.10.0pathogenesis-related homeodomain protein
SwissprotP487851e-154PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A151SRV50.0A0A151SRV5_CAJCA; Uncharacterized protein
STRINGGLYMA13G00540.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52753349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-151pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]