PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_04000
Common NameKK1_004095
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family ERF
Protein Properties Length: 190aa    MW: 20842.8 Da    PI: 4.6259
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_04000genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64e-201262155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   s+ykGVr +k +g+Wv+eIr p++   rkr++lg++++ae+Aa+a +aa+ +l+g
  C.cajan_04000 12 SKYKGVRKRK-WGKWVSEIRLPNS---RKRIWLGSYDSAEKAARAFDAAMFCLRG 62
                   89*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.8E-131262IPR001471AP2/ERF domain
CDDcd000181.64E-311272No hitNo description
SuperFamilySSF541719.15E-221271IPR016177DNA-binding domain
PROSITE profilePS5103222.6421370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-301371IPR001471AP2/ERF domain
SMARTSM003802.1E-331376IPR001471AP2/ERF domain
PRINTSPR003671.2E-91425IPR001471AP2/ERF domain
PRINTSPR003671.2E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MNEKAEEHRD ISKYKGVRKR KWGKWVSEIR LPNSRKRIWL GSYDSAEKAA RAFDAAMFCL  60
RGRNANFNFP DTPPDIAGGS SMTPSQIQAA AAQFANAASH EGLAPPSSSI SLQTDSDVTT  120
HSAPLTDLFT PVASANYESD YGIFPAFDEF SGEFYVPEAA NVNYGEENAN GNANSNTEGL  180
IVDESFLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1512701372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11420KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_04000
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2089693e-79DQ208969.1 Glycine max dehydration-responsive element binding protein 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020228005.11e-139ethylene-responsive transcription factor ERF017
SwissprotQ84QC23e-54ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A151SSR11e-138A0A151SSR1_CAJCA; Ethylene-responsive transcription factor ERF017 family
STRINGGLYMA17G05240.12e-96(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]