PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_04102
Common NameKK1_004201
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family GATA
Protein Properties Length: 116aa    MW: 12615.3 Da    PI: 10.5241
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_04102genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-192457134
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                   C+ CgttkTplWR gp g+k+LCnaCG++ rkk+
  C.cajan_04102 24 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKK 57
                   ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.09E-131758No hitNo description
PROSITE profilePS5011412.4261854IPR000679Zinc finger, GATA-type
SMARTSM004011.4E-111869IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.3E-162258IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.09E-122358No hitNo description
PfamPF003203.7E-172458IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402449IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0016740Molecular Functiontransferase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
LQGSEGEESN PNAGNSNNEH KKTCADCGTT KTPLWRGGPA GPKSLCNACG IRSRKKKRAI  60
LGISKGTTED LRKGKRNNAA AFKRDVFLHR SHWKKLGEEE RAAVLLMSLS YGSVYA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_04102
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020228280.16e-80GATA transcription factor 16
SwissprotQ9FJ105e-33GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A151ST141e-79A0A151ST14_CAJCA; GATA transcription factor 23 (Fragment)
STRINGXP_007154340.13e-56(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-35GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]