PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_04254
Common NameKK1_004358
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB_related
Protein Properties Length: 1148aa    MW: 127512 Da    PI: 9.5489
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_04254genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.9e-085590340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W +eE e ++da +++G++ Wk++a  +  +R+ +++
    C.cajan_04254 55 QWNKEELEHFYDAYRKYGKD-WKKVALAVR-NRSVEMV 90
                     6*****************99.*********.**98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.47451102IPR017884SANT domain
SuperFamilySSF466893.29E-952101IPR009057Homeodomain-like
SMARTSM007175.9E-452100IPR001005SANT/Myb domain
PfamPF002491.9E-65590IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-45590IPR009057Homeodomain-like
CDDcd001674.34E-55698No hitNo description
PfamPF065842.9E-31584684IPR033471DIRP domain
SMARTSM011352.4E-52584685IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1148 aa     Download sequence    Send to blast
MAPSRKSRSV NKRFSNVREA ASSKDKNSEN ASKNRLKASP GIQKKRKLAD MLGPQWNKEE  60
LEHFYDAYRK YGKDWKKVAL AVRNRSVEMV EALYTMNKAY LSLPEGTASV VGLIAMMTDH  120
YSVLGGSDSG KESTDDAEIS KRSQKRLRGK HPSDNKALDG HFSDNSQSHS VASGDGCLSL  180
LKNRHSGIRS HAVRKRTPRV PISYSIGKDN GDRFFSSARP GSKQMVDTND VTHKIALALA  240
EASQRGGSSK ISGSPDKKFL PSPGSYYFQH PKSELAGAKF GSSDLDDGSS ELSLGSTEGN  300
NEDYSRKTIH RSEENLNKHL NDIKEASSGT DDGKTLSFIK SNFDPDFADA KNTRSSYKGS  360
RMKSKRLLLE KDEGSAFDAL KTLADLSLML PVTNPDTESS AQFKEGNHDV VDESKMETHN  420
VFPRIESTAS SKSGKVFFNN GVAVPESEGT DQLNAGFRKR KQKSFNLKND ETHTGFHLSG  480
SQKIKATDEV KKPMVKGKRS SVSTAHSRQL KVVKSPGNPS SSTNDKGQGD DSSFSPMKVS  540
STNQVSPVNR VRPRRKMEKP KPMGKLINCV SSYQMRRWCT FEWFYSAIDY PWFSKREFVE  600
YLDHVGLGHV PRLTRIEWGV IRSSLGRPRR FSEQFLIEEK HKLNQYRESV RSHYAEILAG  660
TKEGLPTDLA QPLIVGQRVI AIHPKTREIH DGSVLTVDHC RYRVQFDQPE LGVEFVMDID  720
CMPFYPFENM PTSLIQHNIS SAQINENLNE LKPNGKLKQR KVAGHTILSP SENLDTLKNL  780
HISPNMHRSS TLSKQTLSKS TSLLNVRKPE TYSEFSQGLV GFSSSSKSQL KVVCSEIGNA  840
QLASSSQPSL LEHVHSKEAD ILAISELNRA LDKKELVLSE LKHMNDGVSE SQKYGDSSVK  900
DSEPFRRNYA SVLKQLTEAN EQVSSALFCL RQRNTYQGSS SVLSLKPMVN FDDPSGQASS  960
SNCSVCHNQE PVSQSHITEI VESSRRKART MVVQATQAMS NLRKTESKVE RIEDAIRFIN  1020
SQLSLEDPTA SATIFLPADS FTLASQDQLT ASVLNPLASC HVQDAELNSS SDQNEMKIPS  1080
ELISHCLATL FMIQKCTERQ FPPADVAQVL DSAVTSLQPL CSKNLPIYGE IQKCMGIIRN  1140
QILALIPT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1551555RPRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_04254
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-119AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020227803.10.0protein ALWAYS EARLY 3
RefseqXP_020227804.10.0protein ALWAYS EARLY 3
RefseqXP_020227805.10.0protein ALWAYS EARLY 3
RefseqXP_020227806.10.0protein ALWAYS EARLY 3
RefseqXP_020227807.10.0protein ALWAYS EARLY 3
RefseqXP_020227808.10.0protein ALWAYS EARLY 3
TrEMBLA0A151STB60.0A0A151STB6_CAJCA; Lin-9 isogeny
STRINGGLYMA17G02741.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding