PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_04261
Common NameKK1_004365
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family NF-YB
Protein Properties Length: 129aa    MW: 14614.3 Da    PI: 5.3142
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_04261genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB171.31e-5317113197
          NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                    +reqd++lPianv+rimk++lP nakisk++ket+qecvsefisfvtseas+kc+re+rkt+ngdd++wala+lGf+dy+epl+ yl++yrele +
  C.cajan_04261  17 MREQDQLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRRERRKTVNGDDVCWALASLGFDDYAEPLRRYLHRYRELEVD 112
                    59********************************************************************************************98 PP

          NF-YB  97 k 97 
                    +
  C.cajan_04261 113 R 113
                    6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.1E-5111121IPR009072Histone-fold
SuperFamilySSF471135.32E-3820120IPR009072Histone-fold
PfamPF008081.5E-262387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.9E-195169No hitNo description
PROSITE patternPS0068505470IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.9E-197088No hitNo description
PRINTSPR006154.9E-1989107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MVDNIGGSSS NAENSGMREQ DQLLPIANVG RIMKQILPPN AKISKESKET MQECVSEFIS  60
FVTSEASEKC RRERRKTVNG DDVCWALASL GFDDYAEPLR RYLHRYRELE VDRSTNQDRG  120
NSPLTREGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4517108192Transcription factor HapC (Eurofung)
4g92_B3e-4517108192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_04261
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-125AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020225500.11e-92nuclear transcription factor Y subunit B-5
SwissprotO822483e-55NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A151STB23e-91A0A151STB2_CAJCA; Nuclear transcription factor Y subunit B-5
STRINGXP_007154257.12e-79(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.11e-48nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]