PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_04658
Common NameKK1_004778
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family MYB
Protein Properties Length: 155aa    MW: 18124.4 Da    PI: 8.0059
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_04658genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-141255448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     W   Ed+ l ++v+q G+++W++Ia+ +  gRt+k+c++rw+++l
    C.cajan_04658 12 WNHAEDKMLRELVRQRGPHDWDLIAKNIE-GRTGKSCRLRWFNHL 55
                     999**************************.*************97 PP
2Myb_DNA-binding38.42.8e-1262104246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       ++++eE e+l+ a+  +G++ W +Ia+ ++ gRt+  +k+  + 
    C.cajan_04658  62 TPFSEEENERLLAAHDVYGSR-WPKIAKQFP-GRTDVAVKNQCNL 104
                      69*******************.*********.********98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.354159IPR017930Myb domain
SuperFamilySSF466893.2E-276101IPR009057Homeodomain-like
SMARTSM007171.3E-11857IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-241162IPR009057Homeodomain-like
PfamPF139211.1E-151272No hitNo description
CDDcd001677.12E-121255No hitNo description
SMARTSM007171.3E-1060108IPR001005SANT/Myb domain
PROSITE profilePS5129412.11760110IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-1763103IPR009057Homeodomain-like
CDDcd001671.81E-763106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MTNKCSRRCH HWNHAEDKML RELVRQRGPH DWDLIAKNIE GRTGKSCRLR WFNHLDPELK  60
KTPFSEEENE RLLAAHDVYG SRWPKIAKQF PGRTDVAVKN QCNLLMAWMQ RKDSKKKSFD  120
EDSNLEEGAS SSPEDELKDS GHKQVPFYDF LGVGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-291210310101B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_04658
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020210676.11e-115transcription factor MYB52
SwissprotQ6R0C42e-40MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A151TYP91e-113A0A151TYP9_CAJCA; Uncharacterized protein
STRINGXP_004162825.12e-40(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-41myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]