PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_04900
Common NameKK1_005021
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family WRKY
Protein Properties Length: 452aa    MW: 49718.6 Da    PI: 7.3212
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_04900genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.4e-31202258259
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    dDgynWrKYGqK+vkgs+f+rsYY+Ct+++Cpvkkk+ers  +++v+ i+Y+geHnh+
  C.cajan_04900 202 DDGYNWRKYGQKNVKGSDFSRSYYKCTHPNCPVKKKLERSL-EGHVTAIIYKGEHNHQ 258
                    8****************************************.***************8 PP
2WRKY107.75.6e-34338396159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  C.cajan_04900 338 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHD 396
                    59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-27187260IPR003657WRKY domain
PROSITE profilePS5081122.056196260IPR003657WRKY domain
SuperFamilySSF1182906.15E-24199260IPR003657WRKY domain
SMARTSM007743.7E-32201259IPR003657WRKY domain
PfamPF031061.1E-23202258IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-37324398IPR003657WRKY domain
SuperFamilySSF1182906.02E-30330398IPR003657WRKY domain
PROSITE profilePS5081138.836333398IPR003657WRKY domain
SMARTSM007741.3E-39338397IPR003657WRKY domain
PfamPF031062.8E-26339396IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MVGGGNGEGE QAPPWPAARP RSVLRPRASV ESVFNGGPTL GYSPGPMTLL SSFFGDGDEC  60
KSFSELLAGA MVDPTTPMPT FTPATFLLLY LFQQHVQCLV IGLVPKFVQG HLEMAHQQML  120
AHVTSSQAVP AYTNVQIQSE HPFSISAMSA SSFTQVPSAS STIAQQLIPL SMPDSRVTES  180
IDFSHSEQKL QSSSVNADKP NDDGYNWRKY GQKNVKGSDF SRSYYKCTHP NCPVKKKLER  240
SLEGHVTAII YKGEHNHQRP HPMPKMDLES CQATAEHGSG TSDSEEVGDH ETEVDGKNVE  300
PDPKRRNTDA RLQDPASIHR SVAEPRIIVQ TISEVDLLDD GYRWRKYGQK VVKGNPYPRS  360
YYKCTTPGCN VRKHVERAST DPKAVITTYE GKHNHDVPAA KTNSHTLANN SASQLKAQNA  420
IPDEKHGFSS RDVGGNEQRP VASLRLKEEQ IT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-43202399878Probable WRKY transcription factor 4
2lex_A5e-43202399878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_04900
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020205691.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-131WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A151TZD40.0A0A151TZD4_CAJCA; Putative WRKY transcription factor 3
STRINGGLYMA07G35381.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.21e-134WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]