PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_05108
Common NameKK1_005237
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C2H2
Protein Properties Length: 237aa    MW: 26876.9 Da    PI: 8.0794
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_05108genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000134971123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C++ F++   L  H+++H
  C.cajan_05108 49 YSCTFCKREFRSAQALGGHMNVH 71
                   99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.17E-64676No hitNo description
Gene3DG3DSA:3.30.160.609.8E-44774IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00654971IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1774976IPR007087Zinc finger, C2H2
PfamPF139124.6E-64972IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MHVKREQTLK PYLEAEVEDD NKNYSWEERA FAEDAARIVG GSMWPPRSYS CTFCKREFRS  60
AQALGGHMNV HRRDRARLKQ NLSPHNNYHE NEPLHRHNKN GFKSLLGNHF SASTQIDCGL  120
AAYYSSPATT IASTRQFEIC GQHSLSPYSS FSSIIFGQKN NTEYKFNGLG CDNHVETSLS  180
VGLTSSPTVD RANINCKRCS KSNDKQRLAF QPEEILLGLD RGMEDLDLEL RLGKQQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-134471229superman protein
2l1o_A3e-134471229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_05108
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9541915e-38CR954191.3 Medicago truncatula chromosome 5 clone mte1-26e13, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020228392.11e-180probable transcriptional regulator RABBIT EARS
TrEMBLA0A151TZZ51e-179A0A151TZZ5_CAJCA; Putative transcriptional regulator RABBIT EARS
STRINGXP_007141854.18e-63(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.17e-29zinc-finger protein 10