PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

C.cajan_05123

Common Name

KK1_005252

Organism

Cajanus cajan

Taxonomic ID

3821

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus

Family

ZF-HD

Protein Properties

Length: 259aa MW: 28395.7 Da PI: 7.3228

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
C.cajan_05123	genome	IIPG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	95.7	3.7e-30	52	108	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY+eC+kNhA+s GghavDGC+Efm++ ge+gt +a+ CaAC+CHRnFHR+e++ e C.cajan_05123 52 AVRYRECQKNHAVSFGGHAVDGCCEFMAA-GEDGTLEAVICAACNCHRNFHRKEMDGE 108 79************************9.999*******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	1.0E-19	53	106	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	7.3E-28	53	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.1E-26	54	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.049	55	104	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.09E-21	183	257	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-32	185	258	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.1E-25	196	253	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MEFDDQEEQD EEMGMPEPPH PPPPPSYDSV GNSARSKIGA AEGRKGAFGA AAVRYRECQK 60 NHAVSFGGHA VDGCCEFMAA GEDGTLEAVI CAACNCHRNF HRKEMDGEMS SFHHRQPPPP 120 PLHHHHQFSP YYHHRIPQHP PGAGYLHHPL ATPPMAQHRP LALPAAASGG GLSRDEEDMS 180 NPSSSGGGGG GGGGSKKRFR TKFTQEQKDK MLAFAEQLGW RIQKHDESAV EQFCAETNVK 240 RNVLKVWMHN NKNTLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-29	195	254	16	75	ZF-HD homeobox family protein
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	194	SGGGGGGGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	C.cajan_05123

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	0.0	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020206398.1	0.0	zinc-finger homeodomain protein 2
Swissprot	Q9SB61	5e-77	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A151U090	0.0	A0A151U090_CAJCA; ZF-HD homeobox protein At4g24660 family
STRING	GLYMA14G35770.1	1e-134	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-66	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]