PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID C.cajan_05538
Common NameKK1_005676
Organism
Cajanus cajan
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus
Family C3H
Protein Properties Length: 654aa    MW: 71546.5 Da    PI: 5.9876
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
C.cajan_05538genomeIIPGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.2e-08273293526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C+ f++ GtC+ Gd+C +aHg
  C.cajan_05538 273 PCPEFRK-GTCQKGDSCEYAHG 293
                    8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484038.35E-1725166IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.2E-1734179IPR020683Ankyrin repeat-containing domain
PfamPF127961.8E-977143IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.83977157IPR020683Ankyrin repeat-containing domain
SMARTSM002480.2577107IPR002110Ankyrin repeat
CDDcd002041.47E-1279155No hitNo description
PROSITE profilePS5008812.583112147IPR002110Ankyrin repeat
SMARTSM002483.8E-4112144IPR002110Ankyrin repeat
SMARTSM003562.1E-5268294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.666268295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-5273294IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5273293IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.103303327IPR000571Zinc finger, CCCH-type
SMARTSM0035630303326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MCSDSKSKLS SPNLVMENGN LQKQNLDGLY NFSVLLELSA SDDFEAFKRE VDEKGLDVNE  60
AGFWYGRKIG SKKMGSETRT PLMIASLFGS TKVVNYILEA ASVDVNRVCG SDGATALHCA  120
VAGGSESSLE IVKLLLDAGA DAECLDARGN KPVDLIAPAF DSSSKSRRKA MELFLRGEER  180
DELMSQEMEL QMFSSKEGAE KKEGSDKKEY PVDISLPDIN NGVYGSDEFR MYSFKVKPCS  240
RAYSHDWTEC PFVHPGENAR RRDPRKYPYS CVPCPEFRKG TCQKGDSCEY AHGVFESWLH  300
PAQYRTRLCK DETGCTRKVC FFAHKPEELR PVYASTGSAM PSPKSYSASG LDMSAMSPLA  360
LSSTSLPMPT VSTPPMSPLA AASSPKSGNL WQNKINLTPP SLQLQGSRLK SALNARDLDL  420
EMELLGLESP ARQQQQQQQQ LIEEIARISS PSFRSKEFNR IVDMSPTNLD DLLASADPCV  480
LSQLHGLSVQ PSTPTHYPSN IPSSPVRKPA GYGFDSSAAV AAAVMNSRSA AFAKRSQSFI  540
DRGAATHHFG LSSPSNPSCR VSSALSDWSS PTGKLDWGVN GDELNKLRKS ASFGFRNNGV  600
TASPIAQPEH VEPDVSWVHS LVKDVPSESS EIFGKEMLSP WGEQLYIEQE QMVA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapC.cajan_05538
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311570.0KT031157.1 Glycine max clone HN_CCL_209 C3H-type 1 Zn transcription factor (Glyma14g01990.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020234856.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A151U1730.0A0A151U173_CAJCA; Zinc finger CCCH domain-containing protein 29
STRINGGLYMA14G01990.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein